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- evm.model.contig_3627.2
evm.model.contig_3627.2
Description : (at4g31210 : 301.0) DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 21441 Blast hits to 18441 proteins in 2923 species: Archae - 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750; Plants - 256; Viruses - 35; Other Eukaryotes - 8168 (source: NCBI BLink). & (reliability: 602.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Porphyridium release: evm.model.contig_3627.2 | |
Cluster | HCCA clusters: Cluster_10 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Mp2g25830.1 | No alias | type-Ia DNA topoisomerase | 0.02 | Orthogroups_2024-Update | |
Seita.1G241000.1 | No alias | type-Ia DNA topoisomerase | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003676 | nucleic acid binding | None | Extended |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0003916 | DNA topoisomerase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006259 | DNA metabolic process | None | Extended |
BP | GO:0006265 | DNA topological change | IEA | InterProScan predictions |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
BP | GO:0006996 | organelle organization | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016043 | cellular component organization | None | Extended |
MF | GO:0016853 | isomerase activity | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
BP | GO:0051276 | chromosome organization | None | Extended |
BP | GO:0071103 | DNA conformation change | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0140097 | catalytic activity, acting on DNA | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
Type | GO Term | Name | Evidence | Source |
BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0004379 | glycylpeptide N-tetradecanoyltransferase activity | IEP | Predicted GO |
MF | GO:0005086 | ARF guanyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006528 | asparagine metabolic process | IEP | Predicted GO |
BP | GO:0006529 | asparagine biosynthetic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
MF | GO:0008171 | O-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008289 | lipid binding | IEP | Predicted GO |
MF | GO:0008378 | galactosyltransferase activity | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016410 | N-acyltransferase activity | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
MF | GO:0019107 | myristoyltransferase activity | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Predicted GO |
MF | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Predicted GO |
BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Predicted GO |
MF | GO:0070569 | uridylyltransferase activity | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |