evm.model.contig_435.23

Description : (q39572|yptc6_chlre : 307.0) Ras-related protein YPTC6 - Chlamydomonas reinhardtii & (at4g18430 : 295.0) RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description)

Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_435.23
Cluster	HCCA clusters: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g02100	No alias	RAB GTPase 11C	0.02	Orthogroups_2024-Update
Bradi2g16480	No alias	RAB GTPase homolog A1F	0.03	Orthogroups_2024-Update
Brara.A00988.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
GRMZM2G029486	No alias	RAB GTPase 11C	0.02	Orthogroups_2024-Update
Glyma.16G001800	No alias	RAB GTPase 11C	0.03	Orthogroups_2024-Update
HORVU5Hr1G056470.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
HORVU5Hr1G080990.3	No alias	Unknown function	0.01	Orthogroups_2024-Update
HORVU5Hr1G114250.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
LOC_Os09g10940	No alias	ras-related protein, putative, expressed	0.02	Orthogroups_2024-Update
Sobic.001G031900.2	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
Sobic.001G261597.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
Sobic.002G153500.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
Sobic.010G163600.1	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
Solyc03g064020	No alias	Ras-related protein RABA4d (AHRD V3.3 *** RAA4D_ARATH)	0.02	Orthogroups_2024-Update
Solyc11g010100	No alias	Ras-related protein Rab11D (AHRD V3.3 *** RB11D_TOBAC)	0.02	Orthogroups_2024-Update
Sopen10g015820	No alias	Ras family	0.02	Orthogroups_2024-Update
Sopen11g004900	No alias	Ras family	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006260	DNA replication	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Predicted GO
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Predicted GO
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predicted GO
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Predicted GO
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Predicted GO
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Predicted GO
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	13	173

External Links

No external refs found!

evm.model.contig_435.23

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation