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  5. evm.model.contig_4410.4

evm.model.contig_4410.4


Description : (at3g03710 : 563.0) Encodes a chloroplast polynucleotide phosphorylase (PNPase). Involved in response to phosphorus (P) starvation. Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.; resistant to inhibition with FSM 10 (RIF10); FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: chlorophyll biosynthetic process, cellular response to phosphate starvation, xanthophyll biosynthetic process, carotene biosynthetic process, negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology, type 1 (InterPro:IPR004088), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT5G14580.1); Has 29137 Blast hits to 25785 proteins in 2865 species: Archae - 377; Bacteria - 19207; Metazoa - 333; Fungi - 67; Plants - 272; Viruses - 0; Other Eukaryotes - 8881 (source: NCBI BLink). & (reliability: 1126.0) & (original description: no original description)


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4410.4
Cluster HCCA clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
Bradi3g48860 No alias polyribonucleotide nucleotidyltransferase, putative 0.01 Orthogroups_2024-Update
Kfl00059_0100 kfl00059_0100_v1.1 (at3g03710 : 796.0) Encodes a chloroplast polynucleotide... 0.02 Orthogroups_2024-Update
LOC_Os07g07310 No alias polynucleotide phosphorylase, putative, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Predicted GO
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0004358 glutamate N-acetyltransferase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006493 protein O-linked glycosylation IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0007088 regulation of mitotic nuclear division IEP Predicted GO
BP GO:0007346 regulation of mitotic cell cycle IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009349 riboflavin synthase complex IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Predicted GO
BP GO:0018199 peptidyl-glutamine modification IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0033044 regulation of chromosome organization IEP Predicted GO
BP GO:0033045 regulation of sister chromatid segregation IEP Predicted GO
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051783 regulation of nuclear division IEP Predicted GO
BP GO:0051983 regulation of chromosome segregation IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901987 regulation of cell cycle phase transition IEP Predicted GO
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predicted GO
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1905818 regulation of chromosome separation IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 268 330
IPR003029 S1_domain 754 823
IPR015848 PNPase_PH_RNA-bd_bac/org-type 371 448
IPR001247 ExoRNase_PH_dom1 452 584
IPR001247 ExoRNase_PH_dom1 135 264
No external refs found!