1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. evm.model.contig_4418.18

evm.model.contig_4418.18


Description : (gnl|cdd|68872 : 118.0) no description available & (at3g51620 : 86.7) PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 386 Blast hits to 356 proteins in 104 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 40; Plants - 181; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description)


Gene families : OG_42_0000882 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000882_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4418.18
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre12.g552650 No alias nucleotidyltransferases 0.02 Orthogroups_2024-Update
Seita.9G495200.1 No alias miRNA cytidylyltransferase *(NTP2/6/7/8) 0.02 Orthogroups_2024-Update
Solyc09g018160 No alias Nucleotidyltransferase domain containing protein,... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.75 No alias (at3g61690 : 217.0) nucleotidyltransferases; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 198 432
No external refs found!