1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen01g010380

Sopen01g010380


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g010380
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Cre09.g392988 No alias Function unknown 0.01 Orthogroups_2024-Update
HORVU0Hr1G014810.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU0Hr1G039350.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G002090.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G084730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g10244 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g28260 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.02 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g004760 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g020280 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g018490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g023200 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g011880 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g010190 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g011030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g027580 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 463 620
IPR005162 Retrotrans_gag_dom 35 124
No external refs found!