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  5. evm.model.contig_4434.4

evm.model.contig_4434.4


Description : (p46297|rs23_fraan : 218.0) 40S ribosomal protein S23 (S12) - Fragaria ananassa (Strawberry) & (at5g02960 : 208.0) Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)


Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4434.4
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
145246 No alias Ribosomal protein S12/S23 family protein 0.34 Orthogroups_2024-Update
A4A49_33378 No alias 40s ribosomal protein s23 0.06 Orthogroups_2024-Update
A4A49_59751 No alias 40s ribosomal protein s23 0.28 Orthogroups_2024-Update
AC225147.4_FG002 No alias Ribosomal protein S12/S23 family protein 0.02 Orthogroups_2024-Update
At3g09680 No alias 40S ribosomal protein S23-1... 0.06 Orthogroups_2024-Update
Bradi2g22897 No alias Ribosomal protein S12/S23 family protein 0.33 Orthogroups_2024-Update
Bradi2g54210 No alias Ribosomal protein S12/S23 family protein 0.23 Orthogroups_2024-Update
Brara.A03520.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.B00072.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.36 Orthogroups_2024-Update
Brara.C00091.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.34 Orthogroups_2024-Update
Brara.C03262.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.J02847.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Cre12.g504200 No alias Ribosomal protein S12/S23 family protein 0.33 Orthogroups_2024-Update
GRMZM2G084465 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
GRMZM2G140609 No alias Ribosomal protein S12/S23 family protein 0.07 Orthogroups_2024-Update
Glyma.03G178000 No alias Ribosomal protein S12/S23 family protein 0.1 Orthogroups_2024-Update
Glyma.10G049400 No alias Ribosomal protein S12/S23 family protein 0.31 Orthogroups_2024-Update
Glyma.13G137100 No alias Ribosomal protein S12/S23 family protein 0.27 Orthogroups_2024-Update
Glyma.19G178800 No alias Ribosomal protein S12/S23 family protein 0.19 Orthogroups_2024-Update
HORVU1Hr1G071570.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
HORVU3Hr1G087380.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
HORVU5Hr1G066080.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
HORVU5Hr1G112390.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Kfl00077_0130 kfl00077_0130_v1.1 (p46297|rs23_fraan : 274.0) 40S ribosomal protein S23... 0.15 Orthogroups_2024-Update
LOC_Os03g60400 No alias 40S ribosomal protein S23, putative, expressed 0.05 Orthogroups_2024-Update
MA_10436470g0020 No alias (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23... 0.11 Orthogroups_2024-Update
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.12 Orthogroups_2024-Update
PSME_00017761-RA No alias (p46297|rs23_fraan : 278.0) 40S ribosomal protein S23... 0.22 Orthogroups_2024-Update
PSME_00017762-RA No alias (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23... 0.06 Orthogroups_2024-Update
Potri.006G131500 No alias Ribosomal protein S12/S23 family protein 0.06 Orthogroups_2024-Update
Potri.008G044400 No alias Ribosomal protein S12/S23 family protein 0.1 Orthogroups_2024-Update
Potri.010G217100 No alias Ribosomal protein S12/S23 family protein 0.06 Orthogroups_2024-Update
Potri.016G085800 No alias Ribosomal protein S12/S23 family protein 0.04 Orthogroups_2024-Update
Pp1s135_33V6 No alias 40s ribosomal protein s23 0.39 Orthogroups_2024-Update
Pp1s264_73V6 No alias 40s ribosomal protein s23 0.14 Orthogroups_2024-Update
Pp1s287_20V6 No alias 40s ribosomal protein s23 0.3 Orthogroups_2024-Update
Pp1s372_2V6 No alias 40s ribosomal protein s23 0.13 Orthogroups_2024-Update
Pp1s61_268V6 No alias 40s ribosomal protein s23 0.34 Orthogroups_2024-Update
Seita.3G213400.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.28 Orthogroups_2024-Update
Seita.5G371300.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.38 Orthogroups_2024-Update
Seita.9G035900.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Sobic.001G036900.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.003G346600.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.45 Orthogroups_2024-Update
Sobic.009G166500.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.35 Orthogroups_2024-Update
Solyc09g007350 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.36 Orthogroups_2024-Update
Solyc10g084310 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.03 Orthogroups_2024-Update
Solyc10g086020 No alias interactor of constitutive active ROPs 3 0.43 Orthogroups_2024-Update
Sopen09g002250 No alias Ribosomal protein S12/S23 0.53 Orthogroups_2024-Update
Sopen10g033750 No alias Ribosomal protein S12/S23 0.14 Orthogroups_2024-Update
Sopen10g035390 No alias Ribosomal protein S12/S23 0.38 Orthogroups_2024-Update
evm.model.tig00001264.27 No alias (at5g02960 : 160.0) Ribosomal protein S12/S23 family... 0.19 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 34 144
No external refs found!