evm.model.contig_4442.1

Description : (at1g58684 : 326.0) Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink). & (reliability: 652.0) & (original description: no original description)

Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_4442.1
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
67484	No alias	Ribosomal protein S5 family protein	0.25	Orthogroups_2024-Update
A4A49_17312	No alias	40s ribosomal protein s2-4	0.26	Orthogroups_2024-Update
AC210013.4_FG019	No alias	Ribosomal protein S5 family protein	0.23	Orthogroups_2024-Update
At1g58380	No alias	At1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6]	0.09	Orthogroups_2024-Update
At3g57490	No alias	40S ribosomal protein S2-4...	0.06	Orthogroups_2024-Update
Bradi1g04660	No alias	Ribosomal protein S5 family protein	0.15	Orthogroups_2024-Update
Bradi1g54270	No alias	Ribosomal protein S5 family protein	0.15	Orthogroups_2024-Update
Brara.A02366.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.29	Orthogroups_2024-Update
Brara.C02137.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.37	Orthogroups_2024-Update
Brara.E00249.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.42	Orthogroups_2024-Update
Cre01.g039250	No alias	Ribosomal protein S5 family protein	0.05	Orthogroups_2024-Update
GRMZM2G092663	No alias	Ribosomal protein S5 family protein	0.06	Orthogroups_2024-Update
Glyma.02G085300	No alias	Ribosomal protein S5 family protein	0.29	Orthogroups_2024-Update
Glyma.05G239000	No alias	Ribosomal protein S5 family protein	0.13	Orthogroups_2024-Update
Glyma.11G019500	No alias	Ribosomal protein S5 family protein	0.02	Orthogroups_2024-Update
HORVU3Hr1G086050.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.24	Orthogroups_2024-Update
HORVU5Hr1G109910.2	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Kfl00142_0100	kfl00142_0100_v1.1	(at3g57490 : 392.0) Ribosomal protein S5 family protein;...	0.04	Orthogroups_2024-Update
LOC_Os03g59310	No alias	ribosomal protein, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os07g10660	No alias	ribosomal protein, putative, expressed	0.04	Orthogroups_2024-Update
MA_10434202g0010	No alias	(at2g41840 : 273.0) Ribosomal protein S5 family protein;...	0.01	Orthogroups_2024-Update
MA_158470g0010	No alias	(at3g57490 : 397.0) Ribosomal protein S5 family protein;...	0.01	Orthogroups_2024-Update
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.07	Orthogroups_2024-Update
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.17	Orthogroups_2024-Update
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.16	Orthogroups_2024-Update
PSME_00012533-RA	No alias	(at3g57490 : 398.0) Ribosomal protein S5 family protein;...	0.05	Orthogroups_2024-Update
PSME_00031543-RA	No alias	(at3g57490 : 396.0) Ribosomal protein S5 family protein;...	0.02	Orthogroups_2024-Update
Potri.001G256800	No alias	Ribosomal protein S5 family protein	0.06	Orthogroups_2024-Update
Potri.006G052400	No alias	Ribosomal protein S5 family protein	0.13	Orthogroups_2024-Update
Potri.016G055000	No alias	Ribosomal protein S5 family protein	0.04	Orthogroups_2024-Update
Pp1s10_190V6	No alias	40s ribosomal protein	0.22	Orthogroups_2024-Update
Pp1s274_5V6	No alias	40s ribosomal protein	0.21	Orthogroups_2024-Update
Pp1s400_15V6	No alias	40s ribosomal protein	0.38	Orthogroups_2024-Update
Seita.2G079700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.34	Orthogroups_2024-Update
Seita.9G044700.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.24	Orthogroups_2024-Update
Sobic.001G046100.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.43	Orthogroups_2024-Update
Sobic.001G046300.1	No alias	component *(uS5) of small ribosomal-subunit (SSU) proteome	0.47	Orthogroups_2024-Update
Solyc04g063290	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.3	Orthogroups_2024-Update
Solyc04g074300	No alias	40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU)	0.41	Orthogroups_2024-Update
Sopen04g026210	No alias	Ribosomal protein S5, N-terminal domain	0.38	Orthogroups_2024-Update
Sopen04g029430	No alias	Ribosomal protein S5, N-terminal domain	0.35	Orthogroups_2024-Update
evm.model.tig00020961.135	No alias	(at3g57490 : 348.0) Ribosomal protein S5 family protein;...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
MF	GO:0098772	molecular function regulator	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013810	Ribosomal_S5_N	98	162
IPR005324	Ribosomal_S5_C	181	252

External Links

No external refs found!

evm.model.contig_4442.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation