evm.model.contig_4456.21

Description : (at1g57860 : 119.0) Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)

Gene families : OG_42_0002269 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002269_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_4456.21
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
170832	No alias	Translation protein SH3-like family protein	0.3	Orthogroups_2024-Update
A4A49_17708	No alias	60s ribosomal protein l21-2	0.11	Orthogroups_2024-Update
A4A49_24703	No alias	60s ribosomal protein l21-2	0.12	Orthogroups_2024-Update
At1g09690	No alias	60S ribosomal protein L21-1...	0.03	Orthogroups_2024-Update
At1g57660	No alias	60S ribosomal protein L21-2...	0.06	Orthogroups_2024-Update
Bradi1g75620	No alias	Translation protein SH3-like family protein	0.08	Orthogroups_2024-Update
Bradi3g28220	No alias	Translation protein SH3-like family protein	0.25	Orthogroups_2024-Update
Brara.F00615.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Brara.F00624.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Brara.H02804.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Brara.H02810.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Brara.I01623.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.31	Orthogroups_2024-Update
Brara.I05254.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.I05263.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Cre06.g278135	No alias	Translation protein SH3-like family protein	0.35	Orthogroups_2024-Update
GRMZM2G026216	No alias	Translation protein SH3-like family protein	0.12	Orthogroups_2024-Update
GRMZM2G149257	No alias	Translation protein SH3-like family protein	0.27	Orthogroups_2024-Update
Glyma.03G207500	No alias	Translation protein SH3-like family protein	0.39	Orthogroups_2024-Update
Glyma.06G207400	No alias	Translation protein SH3-like family protein	0.06	Orthogroups_2024-Update
Glyma.19G205000	No alias	Translation protein SH3-like family protein	0.36	Orthogroups_2024-Update
HORVU1Hr1G038890.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
HORVU4Hr1G084420.2	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Kfl00008_0470	kfl00008_0470_v1.1	(at1g57860 : 268.0) Translation protein SH3-like family...	0.08	Orthogroups_2024-Update
LOC_Os10g32820	No alias	60S ribosomal protein L21-2, putative, expressed	0.12	Orthogroups_2024-Update
MA_186351g0010	No alias	(at1g57860 : 291.0) Translation protein SH3-like family...	0.02	Orthogroups_2024-Update
MA_40819g0010	No alias	(at1g57860 : 290.0) Translation protein SH3-like family...	0.07	Orthogroups_2024-Update
Mp6g01390.1	No alias	component RPL21 of LSU proteome component	0.1	Orthogroups_2024-Update
PSME_00000400-RA	No alias	(at1g57860 : 288.0) Translation protein SH3-like family...	0.03	Orthogroups_2024-Update
PSME_00039521-RA	No alias	(at1g57860 : 292.0) Translation protein SH3-like family...	0.13	Orthogroups_2024-Update
Potri.001G071100	No alias	Translation protein SH3-like family protein	0.02	Orthogroups_2024-Update
Potri.003G159500	No alias	Translation protein SH3-like family protein	0.09	Orthogroups_2024-Update
Potri.006G195400	No alias	Translation protein SH3-like family protein	0.15	Orthogroups_2024-Update
Potri.016G061100	No alias	Translation protein SH3-like family protein	0.12	Orthogroups_2024-Update
Pp1s107_181V6	No alias	60s ribosomal protein l21	0.17	Orthogroups_2024-Update
Pp1s1_780V6	No alias	60s ribosomal protein l21	0.12	Orthogroups_2024-Update
Pp1s298_23V6	No alias	60s ribosomal protein l21	0.19	Orthogroups_2024-Update
Pp1s91_107V6	No alias	60s ribosomal protein l21	0.06	Orthogroups_2024-Update
Seita.9G229600.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Seita.9G544700.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.35	Orthogroups_2024-Update
Sobic.001G226500.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.39	Orthogroups_2024-Update
Sobic.001G508900.1	No alias	component *(eL21) of large ribosomal-subunit (LSU) proteome	0.46	Orthogroups_2024-Update
Solyc10g078960	No alias	60S ribosomal protein L21-like protein (AHRD V3.3 ***...	0.24	Orthogroups_2024-Update
Solyc10g080590	No alias	60S ribosomal protein L21-like protein (AHRD V3.3 ***...	0.33	Orthogroups_2024-Update
Sopen10g029590	No alias	Ribosomal protein L21e	0.32	Orthogroups_2024-Update
Sopen10g031130	No alias	Ribosomal protein L21e	0.38	Orthogroups_2024-Update
evm.model.tig00000640.5	No alias	(at1g57860 : 125.0) Translation protein SH3-like family...	0.16	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001147	Ribosomal_L21e	1	101

External Links

No external refs found!

evm.model.contig_4456.21

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation