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  5. evm.model.contig_4456.25

evm.model.contig_4456.25


Description : (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA (p40) - Glycine max (Soybean) & (at1g72370 : 276.0) acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.; 40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description)


Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4456.25
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
36118 No alias 40s ribosomal protein SA 0.14 Orthogroups_2024-Update
At3g04770 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3] 0.03 Orthogroups_2024-Update
Bradi1g20880 No alias 40s ribosomal protein SA B 0.14 Orthogroups_2024-Update
Bradi1g23780 No alias 40s ribosomal protein SA B 0.17 Orthogroups_2024-Update
Bradi1g60310 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Bradi1g72480 No alias 40s ribosomal protein SA B 0.28 Orthogroups_2024-Update
Brara.B02024.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Brara.D01465.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.3 Orthogroups_2024-Update
Brara.G02358.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.31 Orthogroups_2024-Update
Brara.G03124.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.33 Orthogroups_2024-Update
Cre10.g432800 No alias 40s ribosomal protein SA B 0.04 Orthogroups_2024-Update
GRMZM2G092719 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
GRMZM2G099657 No alias 40s ribosomal protein SA B 0.02 Orthogroups_2024-Update
GRMZM2G126821 No alias 40s ribosomal protein SA B 0.2 Orthogroups_2024-Update
GRMZM2G145308 No alias 40s ribosomal protein SA B 0.1 Orthogroups_2024-Update
GRMZM2G159237 No alias 40s ribosomal protein SA B 0.12 Orthogroups_2024-Update
Glyma.07G043800 No alias 40s ribosomal protein SA B 0.18 Orthogroups_2024-Update
Glyma.08G159800 No alias 40s ribosomal protein SA B 0.13 Orthogroups_2024-Update
Glyma.15G267100 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Glyma.16G012200 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
HORVU2Hr1G030880.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
HORVU4Hr1G077240.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Kfl00055_0160 kfl00055_0160_v1.1 (o22518|rssa_soybn : 376.0) 40S ribosomal protein SA... 0.03 Orthogroups_2024-Update
LOC_Os03g08440 No alias ribosomal protein S2, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g42450 No alias ribosomal protein S2, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g26290.1 No alias component RPSa of SSU proteome 0.04 Orthogroups_2024-Update
Potri.001G164000 No alias 40s ribosomal protein SA 0.04 Orthogroups_2024-Update
Potri.003G071200 No alias 40s ribosomal protein SA B 0.15 Orthogroups_2024-Update
Potri.012G117600 No alias 40s ribosomal protein SA B 0.09 Orthogroups_2024-Update
Potri.015G112900 No alias 40s ribosomal protein SA 0.02 Orthogroups_2024-Update
Pp1s173_16V6 No alias 40s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s48_103V6 No alias 40s ribosomal protein sa 0.19 Orthogroups_2024-Update
Seita.2G389700.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.29 Orthogroups_2024-Update
Seita.9G371600.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Seita.9G517100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Sobic.002G374900.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.38 Orthogroups_2024-Update
Sobic.002G375100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.39 Orthogroups_2024-Update
Sobic.005G229300.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Solyc03g019780 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) 0.21 Orthogroups_2024-Update
Solyc06g072120 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) 0.24 Orthogroups_2024-Update
Sopen03g029850 No alias Ribosomal protein S2 0.38 Orthogroups_2024-Update
Sopen06g028410 No alias Ribosomal protein S2 0.2 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 115 180
IPR001865 Ribosomal_S2 16 109
No external refs found!