Sopen01g010850


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g010850
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Brara.D01170.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Orthogroups_2024-Update
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g52000 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g09760 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g01750 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g29950 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Pp1s132_22V6 No alias No description available 0.02 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.02 Orthogroups_2024-Update
Solyc09g056140 No alias No description available 0.03 Orthogroups_2024-Update
Sopen09g009110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013103 RVT_2 821 1065
IPR001584 Integrase_cat-core 471 583
IPR025724 GAG-pre-integrase_dom 386 453
No external refs found!