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  5. evm.model.contig_454.6

evm.model.contig_454.6


Description : (at3g57230 : 92.4) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.; AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7191 Blast hits to 7190 proteins in 917 species: Archae - 0; Bacteria - 14; Metazoa - 643; Fungi - 316; Plants - 6129; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). & (q6ep49|mad27_orysa : 89.4) MADS-box transcription factor 27 (OsMADS27) (RMADS218) - Oryza sativa (Rice) & (reliability: 184.8) & (original description: no original description)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_454.6
Cluster HCCA clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
At2g03710 No alias Agamous-like MADS-box protein AGL3... 0.03 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.02 Orthogroups_2024-Update
At3g57230 No alias Agamous-like MADS-box protein AGL16... 0.02 Orthogroups_2024-Update
Bradi2g59119 No alias AGAMOUS-like 14 0.02 Orthogroups_2024-Update
Brara.C00694.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.E03583.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
GRMZM2G359952 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.01 Orthogroups_2024-Update
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Orthogroups_2024-Update
Potri.002G062000 No alias AGAMOUS-like 61 0.02 Orthogroups_2024-Update
Potri.003G170000 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Potri.007G050400 No alias AGAMOUS-like 66 0.02 Orthogroups_2024-Update
Pp1s118_161V6 No alias mikc* mads-box transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G368700.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!