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Description : (q9fns4|mbb1_chlre : 103.0) PsbB mRNA maturation factor Mbb1, chloroplast precursor - Chlamydomonas reinhardtii & (at3g17040 : 87.8) It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.; high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). & (reliability: 175.6) & (original description: no original description)
Gene families : OG_42_0004471 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004471_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Porphyridium release: evm.model.contig_455.5 | |
| Cluster | HCCA clusters: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| LOC_Os07g44970 | No alias | XPA-binding protein 2, putative, expressed | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004424 | imidazoleglycerol-phosphate dehydratase activity | IEP | Predicted GO |
| BP | GO:0006415 | translational termination | IEP | Predicted GO |
| BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
| MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
| BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019734 | TPR_repeat | 784 | 816 |
| No external refs found! |