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Description : (at5g44200 : 144.0) Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing.; CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)
Gene families : OG_42_0007295 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007295_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Porphyridium release: evm.model.contig_4637.1 | |
| Cluster | HCCA clusters: Cluster_4 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | Predicted GO |
| MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
| BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
| BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| CC | GO:0016272 | prefoldin complex | IEP | Predicted GO |
| CC | GO:0016469 | proton-transporting two-sector ATPase complex | IEP | Predicted GO |
| CC | GO:0016471 | vacuolar proton-transporting V-type ATPase complex | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| MF | GO:0030145 | manganese ion binding | IEP | Predicted GO |
| CC | GO:0033176 | proton-transporting V-type ATPase complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044437 | vacuolar part | IEP | Predicted GO |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 37 | 107 |
| No external refs found! |