Sopen01g011530

Description : Photosystem II protein

Gene families : OG_42_0002207 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002207_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g011530
Cluster	HCCA clusters: Cluster_369

Target	Alias	Description	ECC score	Gene Family Method
137689	No alias	photosystem II reaction center protein C	0.02	Orthogroups_2024-Update
Bradi1g70724	No alias	photosystem II reaction center protein C	0.02	Orthogroups_2024-Update
Bradi1g78082	No alias	photosystem II reaction center protein C	0.02	Orthogroups_2024-Update
HORVU2Hr1G062030.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
HORVU2Hr1G121590.1	No alias	Unknown function	0.07	Orthogroups_2024-Update
HORVU5Hr1G060530.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
LOC_Os02g24632	No alias	photosystem II 44 kDa reaction center protein, putative,...	0.03	Orthogroups_2024-Update
PSME_00001174-RA	No alias	(p41643\|psbc_pinth : 422.0) Photosystem II 44 kDa...	0.05	Orthogroups_2024-Update
PSME_00003195-RA	No alias	(p41643\|psbc_pinth : 452.0) Photosystem II 44 kDa...	0.04	Orthogroups_2024-Update
PSME_00038449-RA	No alias	(p41643\|psbc_pinth : 132.0) Photosystem II 44 kDa...	0.04	Orthogroups_2024-Update
Solyc10g017940	No alias	Photosystem II CP43 reaction center protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc10g047410	No alias	Photosystem II CP43 reaction center protein (AHRD V3.3...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	InterProScan predictions
BP	GO:0009767	photosynthetic electron transport chain	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016168	chlorophyll binding	IEA	InterProScan predictions
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	58	108

External Links

No external refs found!