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evm.model.contig_483.1


Description : (at5g26980 : 139.0) member of SYP4 Gene Family; syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 2253 Blast hits to 2241 proteins in 274 species: Archae - 0; Bacteria - 54; Metazoa - 961; Fungi - 480; Plants - 362; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)


Gene families : OG_42_0003185 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_483.1
Cluster HCCA clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Kfl00002_0010 kfl00002_0010_v1.1 (at5g26980 : 241.0) member of SYP4 Gene Family; syntaxin... 0.01 Orthogroups_2024-Update
PSME_00025249-RA No alias (at3g05710 : 364.0) member of SYP4 Gene Family; syntaxin... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005892 acetylcholine-gated channel complex IEP Predicted GO
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Predicted GO
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
BP GO:0034311 diol metabolic process IEP Predicted GO
BP GO:0034312 diol biosynthetic process IEP Predicted GO
CC GO:0034702 ion channel complex IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
CC GO:0043235 receptor complex IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:0098802 plasma membrane receptor complex IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 312 363
IPR006011 Syntaxin_N 99 311
No external refs found!