evm.model.contig_487.1

Description : (p35100|clpc_pea : 624.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 619.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1238.0) & (original description: no original description)

Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_487.1
Cluster	HCCA clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
170696	No alias	heat shock protein 101	0.02	Orthogroups_2024-Update
174539	No alias	casein lytic proteinase B3	0.03	Orthogroups_2024-Update
A4A49_26399	No alias	chaperone protein clpb1	0.03	Orthogroups_2024-Update
Bradi2g49660	No alias	heat shock protein 101	0.02	Orthogroups_2024-Update
Bradi3g44335	No alias	CLPC homologue 1	0.01	Orthogroups_2024-Update
Bradi3g44341	No alias	CLPC homologue 1	0.01	Orthogroups_2024-Update
Bradi4g39880	No alias	CLPC homologue 1	0.01	Orthogroups_2024-Update
Brara.G03189.1	No alias	cytosolic chaperone *(Hsp101)	0.01	Orthogroups_2024-Update
Brara.I04445.1	No alias	organellar chaperone *(Clp-p/Clp-m)	0.02	Orthogroups_2024-Update
Cre11.g467575	No alias	casein lytic proteinase B3	0.01	Orthogroups_2024-Update
Cre43.g760497	No alias	CLPC homologue 1	0.01	Orthogroups_2024-Update
GRMZM2G360681	No alias	heat shock protein 101	0.01	Orthogroups_2024-Update
Glyma.04G062200	No alias	casein lytic proteinase B4	0.01	Orthogroups_2024-Update
Glyma.04G200400	No alias	CLPC homologue 1	0.01	Orthogroups_2024-Update
Glyma.06G202200	No alias	heat shock protein 101	0.01	Orthogroups_2024-Update
HORVU4Hr1G090440.2	No alias	organellar chaperone *(Clp-p/Clp-m)	0.01	Orthogroups_2024-Update
HORVU6Hr1G028690.3	No alias	organellar chaperone *(Clp-p/Clp-m)	0.01	Orthogroups_2024-Update
Kfl00101_0070	kfl00101_0070_v1.1	(at5g50920 : 1253.0) Encodes a protein that is similar...	0.01	Orthogroups_2024-Update
LOC_Os02g08490	No alias	chaperone protein clpB 1, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g31300	No alias	chaperone protein clpB 1, putative, expressed	0.01	Orthogroups_2024-Update
MA_596288g0010	No alias	(at5g50920 : 437.0) Encodes a protein that is similar to...	0.01	Orthogroups_2024-Update
MA_763g0010	No alias	(at2g25140 : 1061.0) Encodes ClpB4, which belongs to the...	0.01	Orthogroups_2024-Update
Mp1g02560.1	No alias	chaperone component ClpC of chloroplast Clp-type protease complex	0.01	Orthogroups_2024-Update
Mp1g16450.1	No alias	cytosolic chaperone (Hsp101)	0.01	Orthogroups_2024-Update
Mp3g09010.1	No alias	organellar chaperone (Clp-p\|Clp-m)	0.01	Orthogroups_2024-Update
PSME_00000476-RA	No alias	(q6f2y7\|hs101_orysa : 1375.0) Heat shock protein 101 -...	0.01	Orthogroups_2024-Update
PSME_00000477-RA	No alias	(q6f2y7\|hs101_orysa : 1387.0) Heat shock protein 101 -...	0.01	Orthogroups_2024-Update
PSME_00005341-RA	No alias	(q6f2y7\|hs101_orysa : 1383.0) Heat shock protein 101 -...	0.01	Orthogroups_2024-Update
PSME_00031080-RA	No alias	(at5g51070 : 879.0) ATP-dependent Clp protease...	0.01	Orthogroups_2024-Update
Potri.006G262700	No alias	casein lytic proteinase B4	0.02	Orthogroups_2024-Update
Potri.015G056900	No alias	heat shock protein 101	0.01	Orthogroups_2024-Update
Pp1s196_10V6	No alias	chaperone clpb expressed	0.02	Orthogroups_2024-Update
Pp1s300_55V6	No alias	heat shock protein 101	0.03	Orthogroups_2024-Update
Seita.7G079400.1	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.01	Orthogroups_2024-Update
Sobic.006G065100.1	No alias	chaperone component *(ClpD) of chloroplast Clp-type...	0.01	Orthogroups_2024-Update
Solyc03g115230	No alias	Solanum lycopersicum heat shock protein	0.01	Orthogroups_2024-Update
Solyc06g011380	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc06g082560	No alias	Chaperone protein (AHRD V3.3 *** W9RSC3_9ROSA)	0.02	Orthogroups_2024-Update
Sopen03g034270	No alias	AAA domain (Cdc48 subfamily)	0.03	Orthogroups_2024-Update
evm.model.tig00000655.28	No alias	(at5g50920 : 1134.0) Encodes a protein that is similar...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004180	carboxypeptidase activity	IEP	Predicted GO
MF	GO:0004181	metallocarboxypeptidase activity	IEP	Predicted GO
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006754	ATP biosynthetic process	IEP	Predicted GO
MF	GO:0008235	metalloexopeptidase activity	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0008238	exopeptidase activity	IEP	Predicted GO
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
CC	GO:0009521	photosystem	IEP	Predicted GO
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
MF	GO:0016168	chlorophyll binding	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019684	photosynthesis, light reaction	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0022900	electron transport chain	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
CC	GO:0044436	thylakoid part	IEP	Predicted GO
BP	GO:0046034	ATP metabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019489	Clp_ATPase_C	383	462
IPR003959	ATPase_AAA_core	201	377

External Links

No external refs found!

evm.model.contig_487.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation