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  5. evm.model.contig_503.13

evm.model.contig_503.13


Description : (at5g61460 : 315.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)


Gene families : OG_42_0004684 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004684_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_503.13
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Bradi4g08527 No alias structural maintenance of chromosomes 6A 0.02 Orthogroups_2024-Update
Glyma.09G229900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
LOC_Os09g03370 No alias MIM, putative, expressed 0.01 Orthogroups_2024-Update
evm.model.tig00000600.7 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 686 1083
IPR038729 Rad50/SbcC_AAA 52 283
No external refs found!