Solyc01g105800

Description : MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g105800
Cluster	HCCA clusters: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
A4A49_63038	No alias	agamous-like mads-box protein agl19	0.02	Orthogroups_2024-Update
At1g01530	No alias	AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]	0.02	Orthogroups_2024-Update
At4g36590	No alias	MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]	0.04	Orthogroups_2024-Update
Bradi2g43290	No alias	AGAMOUS-like 62	0.02	Orthogroups_2024-Update
Brara.C04211.1	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	Orthogroups_2024-Update
Brara.K00198.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Glyma.08G250800	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
Glyma.08G282500	No alias	AGAMOUS-like 29	0.02	Orthogroups_2024-Update
HORVU0Hr1G032300.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
HORVU1Hr1G029220.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU1Hr1G063620.2	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.04	Orthogroups_2024-Update
HORVU6Hr1G066140.9	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
LOC_Os02g06860	No alias	OsMADS80 - MADS-box family gene with M-alpha type-box, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g39130	No alias	OsMADS56 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
Mp4g12490.1	No alias	transcription factor (MADS/AGL)	0.02	Orthogroups_2024-Update
Potri.008G041500	No alias	AGAMOUS-like 62	0.04	Orthogroups_2024-Update
Seita.4G160200.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G258000.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Sobic.003G379000.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.04	Orthogroups_2024-Update
Sobic.003G406800.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0042255	ribosome assembly	IEP	Predicted GO
BP	GO:0042256	mature ribosome assembly	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	74	121
IPR002487	TF_Kbox	157	238

External Links

No external refs found!

Solyc01g105800

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation