evm.model.contig_548.2

Description : (at3g04400 : 225.0) embryo defective 2171 (emb2171); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT2G33370.1). & (q07760|rl23_tobac : 225.0) 60S ribosomal protein L23 - Nicotiana tabacum (Common tobacco) & (reliability: 450.0) & (original description: no original description)

Gene families : OG_42_0001290 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001290_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_548.2
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
165708	No alias	Ribosomal protein L14p/L23e family protein	0.29	Orthogroups_2024-Update
A4A49_26558	No alias	60s ribosomal protein l23	0.11	Orthogroups_2024-Update
At1g04480	No alias	At2g33370 [Source:UniProtKB/TrEMBL;Acc:Q1H559]	0.01	Orthogroups_2024-Update
Bradi1g75790	No alias	Ribosomal protein L14p/L23e family protein	0.14	Orthogroups_2024-Update
Bradi3g28300	No alias	Ribosomal protein L14p/L23e family protein	0.2	Orthogroups_2024-Update
Bradi3g55140	No alias	Ribosomal protein L14p/L23e family protein	0.29	Orthogroups_2024-Update
Brara.A03771.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.51	Orthogroups_2024-Update
Brara.C03052.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.55	Orthogroups_2024-Update
Brara.E03449.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.38	Orthogroups_2024-Update
Brara.H03046.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Brara.I05490.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.41	Orthogroups_2024-Update
Brara.J00259.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Cre04.g211800	No alias	Ribosomal protein L14p/L23e family protein	0.46	Orthogroups_2024-Update
GRMZM2G123495	No alias	Ribosomal protein L14p/L23e family protein	0.11	Orthogroups_2024-Update
GRMZM2G150058	No alias	Ribosomal protein L14p/L23e family protein	0.07	Orthogroups_2024-Update
GRMZM2G171181	No alias	Ribosomal protein L14p/L23e family protein	0.09	Orthogroups_2024-Update
Glyma.03G166700	No alias	Ribosomal protein L14p/L23e family protein	0.04	Orthogroups_2024-Update
Glyma.10G039900	No alias	Ribosomal protein L14p/L23e family protein	0.11	Orthogroups_2024-Update
Glyma.13G126400	No alias	Ribosomal protein L14p/L23e family protein	0.37	Orthogroups_2024-Update
Glyma.19G167800	No alias	Ribosomal protein L14p/L23e family protein	0.09	Orthogroups_2024-Update
HORVU1Hr1G039160.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
HORVU4Hr1G083840.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
HORVU6Hr1G090170.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Kfl00761_0070	kfl00761_0070_v1.1	(at3g04400 : 234.0) embryo defective 2171 (emb2171);...	0.1	Orthogroups_2024-Update
LOC_Os10g32920	No alias	ribosomal protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_10432200g0010	No alias	(at3g04400 : 278.0) embryo defective 2171 (emb2171);...	0.04	Orthogroups_2024-Update
Mp6g14310.1	No alias	component RPL23 of LSU proteome component	0.12	Orthogroups_2024-Update
PSME_00015897-RA	No alias	(at3g04400 : 271.0) embryo defective 2171 (emb2171);...	0.23	Orthogroups_2024-Update
Potri.002G257500	No alias	Ribosomal protein L14p/L23e family protein	0.16	Orthogroups_2024-Update
Potri.010G066400	No alias	Ribosomal protein L14p/L23e family protein	0.06	Orthogroups_2024-Update
Potri.010G167700	No alias	Ribosomal protein L14p/L23e family protein	0.03	Orthogroups_2024-Update
Pp1s114_79V6	No alias	60s ribosomal protein l23	0.09	Orthogroups_2024-Update
Pp1s15_152V6	No alias	60s ribosomal protein l23	0.11	Orthogroups_2024-Update
Pp1s280_69V6	No alias	60s ribosomal protein l23	0.3	Orthogroups_2024-Update
Pp1s73_232V6	No alias	60s ribosomal protein l23	0.18	Orthogroups_2024-Update
Seita.1G363100.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.43	Orthogroups_2024-Update
Seita.9G228700.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Seita.9G546200.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.26	Orthogroups_2024-Update
Sobic.001G510800.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.49	Orthogroups_2024-Update
Sobic.004G342400.1	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.4	Orthogroups_2024-Update
Solyc06g008170	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.09	Orthogroups_2024-Update
Solyc06g083780	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.21	Orthogroups_2024-Update
Solyc09g072870	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.34	Orthogroups_2024-Update
Solyc09g090610	No alias	50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)	0.15	Orthogroups_2024-Update
Sopen06g035190	No alias	Ribosomal protein L14p/L23e	0.46	Orthogroups_2024-Update
Sopen09g028670	No alias	Ribosomal protein L14p/L23e	0.46	Orthogroups_2024-Update
Sopen09g033550	No alias	Ribosomal protein L14p/L23e	0.18	Orthogroups_2024-Update
evm.model.tig00021290.9	No alias	(at3g04400 : 253.0) embryo defective 2171 (emb2171);...	0.33	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_L14P	21	138

External Links

No external refs found!

evm.model.contig_548.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation