evm.model.contig_554.8

Description : (at2g44740 : 128.0) cyclin p4;1 (CYCP4;1); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN P4;2 (TAIR:AT5G61650.1); Has 1474 Blast hits to 1416 proteins in 218 species: Archae - 0; Bacteria - 18; Metazoa - 247; Fungi - 710; Plants - 236; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)

Gene families : OG_42_0000447 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000447_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_554.8
Cluster	HCCA clusters: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
At2g45080	No alias	Cyclin [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]	0.02	Orthogroups_2024-Update
At3g21870	No alias	Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]	0.02	Orthogroups_2024-Update
At3g60550	No alias	Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]	0.02	Orthogroups_2024-Update
Brara.E03375.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.02	Orthogroups_2024-Update
HORVU2Hr1G107830.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.01	Orthogroups_2024-Update
PSME_00015828-RA	No alias	(at2g44740 : 200.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.01	Orthogroups_2024-Update
PSME_00019749-RA	No alias	(at2g45080 : 143.0) cyclin p3;1 (cycp3;1); CONTAINS...	0.02	Orthogroups_2024-Update
Seita.3G251400.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.01	Orthogroups_2024-Update
Sobic.004G298500.2	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.03	Orthogroups_2024-Update
Sobic.009G129500.1	No alias	regulatory protein *(CYCP(CYCU) of cell cycle	0.02	Orthogroups_2024-Update
evm.model.tig00020675.89	No alias	(at2g44740 : 108.0) cyclin p4;1 (CYCP4;1); CONTAINS...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEA	InterProScan predictions
BP	GO:0001932	regulation of protein phosphorylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	IEA	InterProScan predictions
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0043549	regulation of kinase activity	None	Extended
BP	GO:0045859	regulation of protein kinase activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071900	regulation of protein serine/threonine kinase activity	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0004357	glutamate-cysteine ligase activity	IEP	Predicted GO
MF	GO:0004425	indole-3-glycerol-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006750	glutathione biosynthetic process	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0008452	RNA ligase activity	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0016197	endosomal transport	IEP	Predicted GO
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predicted GO
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Predicted GO
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Predicted GO
CC	GO:0036452	ESCRT complex	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044440	endosomal part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0071985	multivesicular body sorting pathway	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013922	Cyclin_PHO80-like	44	154

External Links

No external refs found!

evm.model.contig_554.8

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation