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  5. evm.model.contig_556.1

evm.model.contig_556.1


Description : (p06402|psba_marpo : 577.0) Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1) - Marchantia polymorpha (Liverwort) & (atcg00020 : 572.0) Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core; photosystem II reaction center protein A (PSBA); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II reaction centre protein PsbA/D1 (InterPro:IPR005867), Photosynthetic reaction centre, L/M (InterPro:IPR000484); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein D (TAIR:ATCG00270.1). & (reliability: 1144.0) & (original description: no original description)


Gene families : OG_42_0001749 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001749_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_556.1
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Brara.B03183.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00003759-RA No alias (p69551|psba_pinth : 308.0) Photosystem Q(B) protein (32... 0.02 Orthogroups_2024-Update
PSME_00021857-RA No alias (p69551|psba_pinth : 509.0) Photosystem Q(B) protein (32... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA InterProScan predictions
BP GO:0019684 photosynthesis, light reaction IEA InterProScan predictions
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 1 291
No external refs found!