Description : (at1g20960 : 557.0) embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1). & (reliability: 1114.0) & (original description: no original description)
Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_564.2 | |
Cluster | HCCA clusters: Cluster_65 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi3g48850 | No alias | ATP binding;ATP-dependent helicases;DNA helicases | 0.01 | Orthogroups_2024-Update | |
Glyma.06G202500 | No alias | U5 small nuclear ribonucleoprotein helicase | 0.02 | Orthogroups_2024-Update | |
Kfl00102_0100 | kfl00102_0100_v1.1 | (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... | 0.02 | Orthogroups_2024-Update | |
Seita.1G005500.1 | No alias | RNA helicase *(Brr2) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000865.29 | No alias | (at1g20960 : 190.0) embryo defective 1507 (emb1507);... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | Predicted GO |
BP | GO:0006570 | tyrosine metabolic process | IEP | Predicted GO |
BP | GO:0006571 | tyrosine biosynthetic process | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | Predicted GO |
BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Predicted GO |
CC | GO:0009507 | chloroplast | IEP | Predicted GO |
CC | GO:0009536 | plastid | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
No external refs found! |