Description : (at2g38560 : 135.0) Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.; transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description)
Gene families : OG_42_0004003 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004003_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_650.2 | |
Cluster | HCCA clusters: Cluster_43 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Sopen05g030730 | No alias | Transcription factor S-II (TFIIS), central domain | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000123 | histone acetyltransferase complex | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0003951 | NAD+ kinase activity | IEP | Predicted GO |
MF | GO:0005096 | GTPase activator activity | IEP | Predicted GO |
BP | GO:0006473 | protein acetylation | IEP | Predicted GO |
BP | GO:0006475 | internal protein amino acid acetylation | IEP | Predicted GO |
BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006741 | NADP biosynthetic process | IEP | Predicted GO |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016573 | histone acetylation | IEP | Predicted GO |
BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Predicted GO |
BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Predicted GO |
MF | GO:0030695 | GTPase regulator activity | IEP | Predicted GO |
CC | GO:0031248 | protein acetyltransferase complex | IEP | Predicted GO |
BP | GO:0032324 | molybdopterin cofactor biosynthetic process | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0043543 | protein acylation | IEP | Predicted GO |
BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | Predicted GO |
BP | GO:0046039 | GTP metabolic process | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
BP | GO:0051189 | prosthetic group metabolic process | IEP | Predicted GO |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Predicted GO |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
CC | GO:1902493 | acetyltransferase complex | IEP | Predicted GO |
No external refs found! |