Description : (at5g02610 : 134.0) Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1). & (q8l805|rl35_wheat : 111.0) 60S ribosomal protein L35 - Triticum aestivum (Wheat) & (reliability: 268.0) & (original description: no original description)
Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_654.2 | |
Cluster | HCCA clusters: Cluster_25 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
438324 | No alias | Ribosomal L29 family protein | 0.27 | Orthogroups_2024-Update | |
A4A49_28237 | No alias | 60s ribosomal protein l35-4 | 0.23 | Orthogroups_2024-Update | |
A4A49_63512 | No alias | 60s ribosomal protein l35-4 | 0.16 | Orthogroups_2024-Update | |
AC206642.4_FG001 | No alias | Ribosomal L29 family protein | 0.11 | Orthogroups_2024-Update | |
At2g39390 | No alias | 60S ribosomal protein L35-2... | 0.06 | Orthogroups_2024-Update | |
Bradi3g43840 | No alias | Ribosomal L29 family protein | 0.04 | Orthogroups_2024-Update | |
Bradi5g07170 | No alias | Ribosomal L29 family protein | 0.09 | Orthogroups_2024-Update | |
Brara.A03526.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.25 | Orthogroups_2024-Update | |
Brara.B00059.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.C02014.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Brara.C03268.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.34 | Orthogroups_2024-Update | |
Brara.E03085.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.31 | Orthogroups_2024-Update | |
Brara.J02866.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Cre14.g617900 | No alias | Ribosomal L29 family protein | 0.29 | Orthogroups_2024-Update | |
GRMZM2G043279 | No alias | Ribosomal L29 family protein | 0.1 | Orthogroups_2024-Update | |
Glyma.10G291500 | No alias | Ribosomal L29 family protein | 0.19 | Orthogroups_2024-Update | |
Glyma.13G133900 | No alias | Ribosomal L29 family protein | 0.1 | Orthogroups_2024-Update | |
Glyma.13G331900 | No alias | Ribosomal L29 family protein | 0.01 | Orthogroups_2024-Update | |
Glyma.15G042300 | No alias | Ribosomal L29 family protein | 0.01 | Orthogroups_2024-Update | |
Glyma.20G240700 | No alias | Ribosomal L29 family protein | 0.17 | Orthogroups_2024-Update | |
HORVU2Hr1G068120.2 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Kfl00608_0050 | kfl00608_0050_v1.1 | (at5g02610 : 177.0) Ribosomal L29 family protein ;... | 0.15 | Orthogroups_2024-Update | |
LOC_Os02g30050 | No alias | ribosomal protein L29, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_10429159g0020 | No alias | (at5g02610 : 210.0) Ribosomal L29 family protein ;... | 0.12 | Orthogroups_2024-Update | |
Mp6g05620.1 | No alias | component RPL35 of LSU proteome component | 0.13 | Orthogroups_2024-Update | |
PSME_00020825-RA | No alias | (at5g02610 : 157.0) Ribosomal L29 family protein ;... | 0.16 | Orthogroups_2024-Update | |
PSME_00033304-RA | No alias | (at5g02610 : 177.0) Ribosomal L29 family protein ;... | 0.08 | Orthogroups_2024-Update | |
PSME_00053522-RA | No alias | (at5g02610 : 154.0) Ribosomal L29 family protein ;... | 0.01 | Orthogroups_2024-Update | |
Potri.006G214100 | No alias | Ribosomal L29 family protein | 0.02 | Orthogroups_2024-Update | |
Potri.006G214200 | No alias | Ribosomal L29 family protein | 0.06 | Orthogroups_2024-Update | |
Potri.008G048800 | No alias | Ribosomal L29 family protein | 0.07 | Orthogroups_2024-Update | |
Potri.010G212300 | No alias | Ribosomal L29 family protein | 0.12 | Orthogroups_2024-Update | |
Pp1s102_67V6 | No alias | 60s ribosomal protein l35 | 0.17 | Orthogroups_2024-Update | |
Pp1s133_93V6 | No alias | 60s ribosomal protein l35 | 0.21 | Orthogroups_2024-Update | |
Pp1s1_489V6 | No alias | 60s ribosomal protein l35 | 0.29 | Orthogroups_2024-Update | |
Seita.1G166300.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Seita.7G064700.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.21 | Orthogroups_2024-Update | |
Sobic.004G152400.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.26 | Orthogroups_2024-Update | |
Sobic.004G152700.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.32 | Orthogroups_2024-Update | |
Solyc04g010240 | No alias | 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) | 0.28 | Orthogroups_2024-Update | |
Solyc05g054810 | No alias | 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) | 0.3 | Orthogroups_2024-Update | |
Solyc06g075620 | No alias | 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) | 0.02 | Orthogroups_2024-Update | |
Sopen04g005430 | No alias | Ribosomal L29 protein | 0.11 | Orthogroups_2024-Update | |
Sopen05g033280 | No alias | Ribosomal L29 protein | 0.13 | Orthogroups_2024-Update | |
evm.model.tig00000241.79 | No alias | (at3g55170 : 158.0) Ribosomal L29 family protein ;... | 0.26 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Predicted GO |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006417 | regulation of translation | IEP | Predicted GO |
BP | GO:0006448 | regulation of translational elongation | IEP | Predicted GO |
BP | GO:0006449 | regulation of translational termination | IEP | Predicted GO |
BP | GO:0006452 | translational frameshifting | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Predicted GO |
BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Predicted GO |
BP | GO:0043244 | regulation of protein complex disassembly | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0045727 | positive regulation of translation | IEP | Predicted GO |
BP | GO:0045901 | positive regulation of translational elongation | IEP | Predicted GO |
BP | GO:0045905 | positive regulation of translational termination | IEP | Predicted GO |
BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001854 | Ribosomal_L29/L35 | 9 | 64 |
No external refs found! |