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  5. Sopen01g012860

Sopen01g012860


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g012860
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g33450 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.01 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.01 Orthogroups_2024-Update
Sopen02g004620 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen02g006530 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen02g011110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g005110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen05g016700 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen05g022330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g023200 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen06g014260 No alias Integrase core domain 0.06 Orthogroups_2024-Update
Sopen07g021480 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.2 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen11g008450 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen11g013220 No alias Retrotransposon gag protein 0.01 Orthogroups_2024-Update
Sopen11g025830 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen12g027180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 927 1038
IPR000477 RT_dom 385 544
No external refs found!