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  5. evm.model.contig_706.1

evm.model.contig_706.1


Description : (p56311|ycf3_chlvu : 196.0) Photosystem I assembly protein ycf3 - Chlorella vulgaris (Green alga) & (atcg00360 : 141.0) Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I.; YCF3; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1). & (reliability: 282.0) & (original description: no original description)


Gene families : OG_42_0006285 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006285_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_706.1
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Kfl00071_0240 kfl00071_0240_v1.1 (q8m9w1|ycf3_chagl : 301.0) Photosystem I assembly... 0.01 Orthogroups_2024-Update
Mp3g09610.1 No alias no hits & (original description: none) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001440 TPR_1 56 86
IPR019734 TPR_repeat 21 50
No external refs found!