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  5. 10002

10002


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 10002
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_10277392g0010 No alias (at4g18750 : 498.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00032004-RA No alias (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... 0.03 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 143 190
IPR002885 Pentatricopeptide_repeat 346 394
IPR002885 Pentatricopeptide_repeat 481 529
IPR002885 Pentatricopeptide_repeat 245 289
IPR002885 Pentatricopeptide_repeat 419 448
IPR002885 Pentatricopeptide_repeat 319 341
IPR002885 Pentatricopeptide_repeat 48 73
IPR002885 Pentatricopeptide_repeat 586 614
IPR002885 Pentatricopeptide_repeat 20 46
IPR002885 Pentatricopeptide_repeat 450 477
IPR002885 Pentatricopeptide_repeat 620 647
No external refs found!