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  5. Solyc01g105900

Solyc01g105900


Description : Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g105900
Cluster HCCA clusters: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Brara.C02651.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Brara.H00876.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Glyma.12G102000 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Glyma.12G197500 No alias terpene synthase 02 0.03 Orthogroups_2024-Update
MA_10196363g0010 No alias (p59287|cass_ricco : 245.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
MA_10435706g0010 No alias (p93665|dcs1_goshi : 286.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
MA_70145g0010 No alias (at4g16740 : 253.0) Encodes an (E,E)-alpha-farnesene... 0.03 Orthogroups_2024-Update
MA_8002141g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00003113-RA No alias (at3g25810 : 250.0) Terpenoid cyclases/Protein... 0.03 Orthogroups_2024-Update
PSME_00003265-RA No alias (at4g02780 : 372.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
PSME_00003483-RA No alias (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00007191-RA No alias (at4g16740 : 258.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00012291-RA No alias (p93665|dcs1_goshi : 240.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00018711-RA No alias (p93665|dcs1_goshi : 196.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00025006-RA No alias (at4g16730 : 150.0) In the Col ecotype, no functional... 0.03 Orthogroups_2024-Update
PSME_00035829-RA No alias (q40577|5eas_tobac : 197.0) Aristolochene synthase (EC... 0.03 Orthogroups_2024-Update
PSME_00037858-RA No alias (at4g16740 : 161.0) Encodes an (E,E)-alpha-farnesene... 0.03 Orthogroups_2024-Update
PSME_00044370-RA No alias (at4g16730 : 128.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
Potri.011G031800 No alias terpene synthase-like sequence-1,8-cineole 0.05 Orthogroups_2024-Update
Solyc01g105920 No alias (E)-beta-ocimene synthase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
BP GO:0008152 metabolic process IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0019825 oxygen binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 54 161
IPR005630 Terpene_synthase_metal-bd 229 495
No external refs found!