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  5. 105356

105356


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 105356
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
462 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_18851 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.02 Orthogroups_2024-Update
At1g18485 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Orthogroups_2024-Update
At2g46050 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.02 Orthogroups_2024-Update
At3g29230 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Orthogroups_2024-Update
Bradi1g05610 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g27440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G01478.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.K00505.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G423538 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G811022 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G311600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G173900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G286300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G193700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G206000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G026070.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G026110.4 No alias RNA editing factor *(DOT4) 0.03 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_5481g0010 No alias (at4g18750 : 690.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00018598-RA No alias (at1g11290 : 726.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
Potri.013G044700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G029500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s276_42V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Pp1s446_7V6 No alias F18A5.40; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Pp1s543_6V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.01 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.3G126600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G381200.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G356100.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G189200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc02g093380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen06g024560 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 576 624
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 270 316
IPR002885 Pentatricopeptide_repeat 368 414
IPR002885 Pentatricopeptide_repeat 469 515
IPR002885 Pentatricopeptide_repeat 68 114
IPR002885 Pentatricopeptide_repeat 443 468
IPR002885 Pentatricopeptide_repeat 651 671
No external refs found!