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  5. 106624

106624


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 106624
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
16621 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
A4A49_29893 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.02 Orthogroups_2024-Update
At4g21300 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Orthogroups_2024-Update
Bradi2g23670 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.03 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre06.g298300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G073460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G049100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G202500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os09g38310 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 412 459
IPR002885 Pentatricopeptide_repeat 309 356
IPR002885 Pentatricopeptide_repeat 514 560
IPR002885 Pentatricopeptide_repeat 210 257
IPR002885 Pentatricopeptide_repeat 111 156
IPR002885 Pentatricopeptide_repeat 718 744
IPR002885 Pentatricopeptide_repeat 86 109
IPR002885 Pentatricopeptide_repeat 754 781
IPR002885 Pentatricopeptide_repeat 283 307
IPR002885 Pentatricopeptide_repeat 589 610
IPR002885 Pentatricopeptide_repeat 691 713
IPR002885 Pentatricopeptide_repeat 619 647
IPR002885 Pentatricopeptide_repeat 788 812
No external refs found!