107359

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0009211 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009211_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 107359
Cluster	HCCA clusters: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bradi3g16967	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Orthogroups_2024-Update
MA_482767g0010	No alias	(at2g22070 : 622.0) pentatricopeptide (PPR)...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	331	454
IPR002885	Pentatricopeptide_repeat	27	55
IPR002885	Pentatricopeptide_repeat	131	156
IPR002885	Pentatricopeptide_repeat	58	87
IPR002885	Pentatricopeptide_repeat	159	185
IPR002885	Pentatricopeptide_repeat	232	255
IPR002885	Pentatricopeptide_repeat	1	19

External Links

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