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  5. Sopen01g013800

Sopen01g013800


Description : Chromo (CHRromatin Organisation MOdifier) domain


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g013800
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g33450 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g10244 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.04 Orthogroups_2024-Update
Solyc10g036800 No alias No description available 0.02 Orthogroups_2024-Update
Solyc12g019400 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g015430 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g004760 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.05 Orthogroups_2024-Update
Sopen05g016830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g017590 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen05g018490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g011880 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g014260 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen08g011030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen08g020970 No alias Reverse transcriptase-like 0.03 Orthogroups_2024-Update
Sopen09g020310 No alias Retroviral aspartyl protease 0.09 Orthogroups_2024-Update
Sopen09g023250 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen10g007750 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.07 Orthogroups_2024-Update
Sopen11g020800 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g025510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g028100 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 531 626
IPR005162 Retrotrans_gag_dom 121 212
No external refs found!