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  5. 108652

108652


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 108652
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
At1g05750 No alias Pentatricopeptide repeat-containing protein At1g05750,... 0.03 Orthogroups_2024-Update
At2g36730 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.02 Orthogroups_2024-Update
At3g08820 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Bradi2g22840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.02 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.02 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os07g39090 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 380 427
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 454 480
IPR002885 Pentatricopeptide_repeat 354 376
IPR002885 Pentatricopeptide_repeat 282 307
IPR002885 Pentatricopeptide_repeat 49 74
IPR032867 DYW_dom 553 677
No external refs found!