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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 108969 | |
| Cluster | HCCA clusters: Cluster_10 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 34426 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.05 | Orthogroups_2024-Update | |
| At3g13770 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| At4g38010 | No alias | Pentatricopeptide repeat-containing protein At4g38010... | 0.03 | Orthogroups_2024-Update | |
| MA_183278g0010 | No alias | (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| MA_412g0010 | No alias | (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_80970g0010 | No alias | (at1g11290 : 615.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00003812-RA | No alias | (at2g13600 : 494.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00012885-RA | No alias | (at1g08070 : 603.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00013106-RA | No alias | (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00015058-RA | No alias | (at1g11290 : 635.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00022065-RA | No alias | (at3g57430 : 642.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00028969-RA | No alias | (at4g13650 : 580.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00031833-RA | No alias | (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00033049-RA | No alias | (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00036890-RA | No alias | (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00037063-RA | No alias | (at4g18750 : 572.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G478900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G034400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G142400.2 | No alias | RNA editing factor *(PGN) | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 499 | 528 |
| IPR002885 | Pentatricopeptide_repeat | 470 | 497 |
| IPR002885 | Pentatricopeptide_repeat | 225 | 252 |
| IPR002885 | Pentatricopeptide_repeat | 197 | 223 |
| IPR002885 | Pentatricopeptide_repeat | 22 | 69 |
| IPR002885 | Pentatricopeptide_repeat | 125 | 172 |
| IPR002885 | Pentatricopeptide_repeat | 392 | 440 |
| No external refs found! |