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  4. Sequence
  5. 113974

113974


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 113974
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Brara.C04029.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.F00415.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G026110.4 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G109000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G282000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G041000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 279 325
IPR002885 Pentatricopeptide_repeat 177 225
IPR002885 Pentatricopeptide_repeat 379 408
IPR002885 Pentatricopeptide_repeat 651 674
IPR002885 Pentatricopeptide_repeat 551 576
IPR002885 Pentatricopeptide_repeat 579 609
IPR002885 Pentatricopeptide_repeat 82 106
IPR002885 Pentatricopeptide_repeat 253 273
IPR002885 Pentatricopeptide_repeat 351 377
No external refs found!