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  4. Sequence
  5. 116559

116559


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0004570 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 116559
Cluster HCCA clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
PSME_00045169-RA No alias (at3g09650 : 467.0) RNA binding protein involved in the... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 164 210
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 97 133
IPR002885 Pentatricopeptide_repeat 339 359
IPR002885 Pentatricopeptide_repeat 437 460
IPR002885 Pentatricopeptide_repeat 237 258
IPR002885 Pentatricopeptide_repeat 1 19
IPR002885 Pentatricopeptide_repeat 138 163
IPR002885 Pentatricopeptide_repeat 368 392
No external refs found!