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  5. Sopen01g014800

Sopen01g014800


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000495 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g014800
Cluster HCCA clusters: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Solyc04g014660 No alias No description available 0.04 Orthogroups_2024-Update
Solyc11g017260 No alias No description available 0.03 Orthogroups_2024-Update
Solyc11g030740 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g010910 No alias Integrase core domain 0.05 Orthogroups_2024-Update
Sopen01g014450 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen01g014560 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen01g017540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g012160 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g014280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g018800 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen05g018860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g022020 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g025320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g010390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen07g014470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g009500 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen11g021120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g013000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen12g015620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 548 707
IPR005162 Retrotrans_gag_dom 11 107
IPR001584 Integrase_cat-core 1090 1201
IPR001878 Znf_CCHC 215 231
No external refs found!