124564

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 124564
Cluster	HCCA clusters: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
HORVU3Hr1G080630.6	No alias	Unknown function	0.03	Orthogroups_2024-Update
MA_12023g0010	No alias	(at4g02750 : 731.0) Tetratricopeptide repeat (TPR)-like...	0.05	Orthogroups_2024-Update
PSME_00013800-RA	No alias	(at2g03880 : 405.0) Pentatricopeptide repeat (PPR)...	0.03	Orthogroups_2024-Update
PSME_00016653-RA	No alias	(at3g02010 : 685.0) Pentatricopeptide repeat (PPR)...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
CC	GO:0009523	photosystem II	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
CC	GO:1990204	oxidoreductase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	539	585
IPR002885	Pentatricopeptide_repeat	438	484
IPR002885	Pentatricopeptide_repeat	199	245
IPR002885	Pentatricopeptide_repeat	275	297
IPR002885	Pentatricopeptide_repeat	613	634
IPR002885	Pentatricopeptide_repeat	342	368
IPR002885	Pentatricopeptide_repeat	173	198
IPR002885	Pentatricopeptide_repeat	98	125
IPR002885	Pentatricopeptide_repeat	305	330

External Links

No external refs found!