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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 129973 | |
| Cluster | HCCA clusters: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| MA_126037g0020 | No alias | (at4g02750 : 474.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_193080g0010 | No alias | (at4g33170 : 603.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_43497g0010 | No alias | (at1g11290 : 666.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| MA_9354530g0010 | No alias | (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| PSME_00000162-RA | No alias | (at2g27610 : 616.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00007848-RA | No alias | (at3g03580 : 694.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00013800-RA | No alias | (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00015058-RA | No alias | (at1g11290 : 635.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00017819-RA | No alias | (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00026228-RA | No alias | (at3g57430 : 606.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00028519-RA | No alias | (at2g22070 : 606.0) pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00032004-RA | No alias | (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00052953-RA | No alias | (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00056296-RA | No alias | (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00057046-RA | No alias | (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Potri.006G076100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Solyc02g088650 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 406 | 430 |
| IPR002885 | Pentatricopeptide_repeat | 7 | 36 |
| IPR002885 | Pentatricopeptide_repeat | 337 | 364 |
| IPR002885 | Pentatricopeptide_repeat | 38 | 66 |
| IPR002885 | Pentatricopeptide_repeat | 205 | 226 |
| IPR002885 | Pentatricopeptide_repeat | 102 | 126 |
| IPR002885 | Pentatricopeptide_repeat | 369 | 396 |
| IPR002885 | Pentatricopeptide_repeat | 306 | 330 |
| IPR002885 | Pentatricopeptide_repeat | 132 | 176 |
| IPR002885 | Pentatricopeptide_repeat | 230 | 278 |
| No external refs found! |