130534

Description : chromatin remodeling 4

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 130534
Cluster	HCCA clusters: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
A4A49_03849	No alias	protein chromatin remodeling 4	0.03	Orthogroups_2024-Update
A4A49_27543	No alias	putative atp-dependent dna helicase chr12	0.02	Orthogroups_2024-Update
At2g13370	No alias	Protein CHROMATIN REMODELING 5...	0.02	Orthogroups_2024-Update
GRMZM2G097289	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Glyma.06G063400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Glyma.11G004100	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
Glyma.14G033600	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Glyma.15G097000	No alias	chromatin remodeling factor17	0.03	Orthogroups_2024-Update
Glyma.17G023600	No alias	chromatin remodeling factor17	0.02	Orthogroups_2024-Update
LOC_Os05g05780	No alias	chromatin-remodeling complex ATPase chain, putative, expressed	0.02	Orthogroups_2024-Update
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Orthogroups_2024-Update
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.02	Orthogroups_2024-Update
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
Potri.008G205600	No alias	chromatin remodeling factor17	0.03	Orthogroups_2024-Update
Potri.018G021100	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Solyc02g062780	No alias	chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)	0.03	Orthogroups_2024-Update
Solyc02g068560	No alias	CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3...	0.04	Orthogroups_2024-Update
Solyc06g065730	No alias	chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Sopen01g029280	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.tig00000983.26	No alias	(at2g13370 : 651.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Predicted GO
MF	GO:0004096	catalase activity	IEP	Predicted GO
MF	GO:0004097	catechol oxidase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016887	ATPase activity	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0022804	active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042623	ATPase activity, coupled	IEP	Predicted GO
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Predicted GO
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	511	625
IPR023780	Chromo_domain	112	146
IPR009463	DUF1087	798	839
IPR000330	SNF2_N	214	488

External Links

No external refs found!

130534

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation