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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 134446 | |
| Cluster | HCCA clusters: Cluster_94 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PSME_00001942-RA | No alias | (at3g57430 : 689.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00005130-RA | No alias | (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... | 0.03 | Orthogroups_2024-Update | |
| PSME_00008064-RA | No alias | (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... | 0.02 | Orthogroups_2024-Update | |
| PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00015835-RA | No alias | (at4g01030 : 610.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00025245-RA | No alias | (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00039409-RA | No alias | (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00041541-RA | No alias | (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00051765-RA | No alias | (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00055621-RA | No alias | (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056966-RA | No alias | (at4g13650 : 674.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Seita.3G224300.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G217900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc01g006920 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc01g100800 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc03g007840 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update | |
| Solyc03g063690 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc03g093630 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc04g051480 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc07g042760 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g007230 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g035770 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
| CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 103 | 133 |
| IPR002885 | Pentatricopeptide_repeat | 75 | 102 |
| IPR002885 | Pentatricopeptide_repeat | 613 | 632 |
| IPR002885 | Pentatricopeptide_repeat | 374 | 399 |
| IPR002885 | Pentatricopeptide_repeat | 176 | 202 |
| IPR002885 | Pentatricopeptide_repeat | 204 | 228 |
| IPR002885 | Pentatricopeptide_repeat | 533 | 576 |
| IPR002885 | Pentatricopeptide_repeat | 301 | 346 |
| IPR002885 | Pentatricopeptide_repeat | 430 | 476 |
| No external refs found! |