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  5. 136561

136561


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0007606 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007606_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 136561
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
At1g02060 No alias Pentatricopeptide repeat-containing protein At1g02060,... 0.02 Orthogroups_2024-Update
Bradi3g02140 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G012040.1 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_10431553g0020 No alias (at1g02060 : 504.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Seita.1G108300.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 82 110
IPR002885 Pentatricopeptide_repeat 119 142
IPR002885 Pentatricopeptide_repeat 536 558
IPR002885 Pentatricopeptide_repeat 283 314
IPR002885 Pentatricopeptide_repeat 249 282
IPR002885 Pentatricopeptide_repeat 213 242
IPR002885 Pentatricopeptide_repeat 147 195
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 320 368
IPR002885 Pentatricopeptide_repeat 393 439
No external refs found!