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    4. Sequence
    5. MA_949447g0010

    MA_949447g0010


    Description : (q8gu92|pdr2_orysa : 473.0) Probable pleiotropic drug resistance protein 2 - Oryza sativa (Rice) & (at1g15520 : 467.0) ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.; pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink). & (reliability: 934.0) & (original description: no original description)


    Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

    Sequence : coding (download), protein (download)


    Attention: This gene has low abundance.


    Download

    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type Description Actions
    Neighborhood Picea release: MA_949447g0010
    Cluster HCCA clusters: Cluster_266

    Target Alias Description ECC score Gene Family Method Actions
    A4A49_33262 No alias abc transporter g family member 32 0.03 Orthogroups_2024-Update
    Bradi2g43150 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
    LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.02 Orthogroups_2024-Update
    MA_598099g0010 No alias (q5z9s8|pdr12_orysa : 976.0) Pleiotropic drug resistance... 0.05 Orthogroups_2024-Update
    PSME_00001761-RA No alias (q5z9s8|pdr12_orysa : 1822.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
    PSME_00012292-RA No alias (at2g29940 : 1536.0) pleiotropic drug resistance 3... 0.04 Orthogroups_2024-Update
    PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
    PSME_00015447-RA No alias (at1g15210 : 1560.0) pleiotropic drug resistance 7... 0.03 Orthogroups_2024-Update
    Seita.2G179600.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
    Seita.9G187800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
    Sobic.003G215800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update

    Type GO Term Name Evidence Source
    CC GO:0016020 membrane IEA InterProScan predictions
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    137703 details
    1. Home
    2. Species
    3. Selaginella moellendorffii
    4. Sequence
    5. 137703

    137703


    Description : ribosomal protein L23.1


    Gene families : OG_42_0004433 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004433_tree

    Sequence : coding (download), protein (download)


    Attention: This gene has low abundance.


    Download

    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type GO Term Name Evidence Source
    BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
    MF GO:0003723 RNA binding IEP Predicted GO
    BP GO:0009116 nucleoside metabolic process IEP Predicted GO
    BP GO:0009250 glucan biosynthetic process IEP Predicted GO
    MF GO:0016759 cellulose synthase activity IEP Predicted GO
    MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
    Type Description Actions
    Neighborhood Selaginella: 137703
    Cluster HCCA clusters: Cluster_55

    Target Alias Description ECC score Gene Family Method Actions
    Bradi1g32454 No alias ribosomal protein L23 0.07 Orthogroups_2024-Update
    LOC_Os10g21358 No alias chloroplast 50S ribosomal protein L23, putative 0.02 Orthogroups_2024-Update
    Potri.004G104100 No alias ribosomal protein L23 0.03 Orthogroups_2024-Update
    Seita.J015500.1 No alias component *(uL23c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update

    Type GO Term Name Evidence Source
    MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
    CC GO:0005840 ribosome IEA InterProScan predictions
    BP GO:0006412 translation IEA InterProScan predictions
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
    MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
    MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
    CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
    BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
    BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
    BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
    BP GO:0006351 transcription, DNA-templated IEP Predicted GO
    BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
    BP GO:0006754 ATP biosynthetic process IEP Predicted GO
    BP GO:0006811 ion transport IEP Predicted GO
    BP GO:0006812 cation transport IEP Predicted GO
    BP GO:0006839 mitochondrial transport IEP Predicted GO
    BP GO:0006848 pyruvate transport IEP Predicted GO
    BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Predicted GO
    MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
    MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
    BP GO:0009117 nucleotide metabolic process IEP Predicted GO
    BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
    BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
    BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
    BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
    BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
    BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predicted GO
    BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predicted GO
    BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predicted GO
    BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
    BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
    BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
    BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
    BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
    BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
    BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
    BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predicted GO
    BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predicted GO
    BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predicted GO
    BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predicted GO
    BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
    BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
    CC GO:0009521 photosystem IEP Predicted GO
    CC GO:0009522 photosystem I IEP Predicted GO
    CC GO:0009579 thylakoid IEP Predicted GO
    BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
    BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
    MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
    MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
    MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
    MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
    BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
    BP GO:0015711 organic anion transport IEP Predicted GO
    BP GO:0015718 monocarboxylic acid transport IEP Predicted GO
    BP GO:0015849 organic acid transport IEP Predicted GO
    MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
    BP GO:0015977 carbon fixation IEP Predicted GO
    BP GO:0015979 photosynthesis IEP Predicted GO
    BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
    BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
    MF GO:0016168 chlorophyll binding IEP Predicted GO
    MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predicted GO
    BP GO:0017144 drug metabolic process IEP Predicted GO
    BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
    BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
    BP GO:0019637 organophosphate metabolic process IEP Predicted GO
    BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
    BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
    CC GO:0019866 organelle inner membrane IEP Predicted GO
    MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
    BP GO:0022900 electron transport chain IEP Predicted GO
    CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
    MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
    BP GO:0034220 ion transmembrane transport IEP Predicted GO
    BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
    BP GO:0044281 small molecule metabolic process IEP Predicted GO
    CC GO:0044425 membrane part IEP Predicted GO
    CC GO:0044436 thylakoid part IEP Predicted GO
    MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
    CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
    BP GO:0046034 ATP metabolic process IEP Predicted GO
    BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
    MF GO:0046906 tetrapyrrole binding IEP Predicted GO
    BP GO:0046942 carboxylic acid transport IEP Predicted GO
    MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
    BP GO:0055085 transmembrane transport IEP Predicted GO
    BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
    BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
    BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
    BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
    BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
    MF GO:0097747 RNA polymerase activity IEP Predicted GO
    BP GO:0098655 cation transmembrane transport IEP Predicted GO
    BP GO:0098656 anion transmembrane transport IEP Predicted GO
    BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
    BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
    CC GO:0098796 membrane protein complex IEP Predicted GO
    BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
    BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
    BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
    BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
    BP GO:1901475 pyruvate transmembrane transport IEP Predicted GO
    BP GO:1902600 proton transmembrane transport IEP Predicted GO
    BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
    BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
    BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
    InterPro domains Description Start Stop
    IPR013025 Ribosomal_L25/23 7 88
    No external refs found!