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  5. Sopen01g016050

Sopen01g016050


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g016050
Cluster HCCA clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G317572 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU5Hr1G106200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g093580 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g062400 No alias No description available 0.02 Orthogroups_2024-Update
Solyc09g059360 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g021460 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen09g011980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g014800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!