Sopen01g016340

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g016340
Cluster	HCCA clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
Solyc06g060030	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc08g062410	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen02g020410	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen05g013410	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen05g015450	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g029770	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
evm.model.contig_3644.2	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
evm.model.contig_3718.1	No alias	(p10978\|polx_tobac : 570.0) Retrovirus-related Pol...	0.03	Orthogroups_2024-Update
evm.model.contig_4508.4	No alias	(p10978\|polx_tobac : 387.0) Retrovirus-related Pol...	0.03	Orthogroups_2024-Update
evm.model.contig_4533.1	No alias	(p10978\|polx_tobac : 122.0) Retrovirus-related Pol...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	224	240
IPR013103	RVT_2	821	1052
IPR001584	Integrase_cat-core	471	583
IPR005162	Retrotrans_gag_dom	1117	1203
IPR025724	GAG-pre-integrase_dom	386	453

External Links

No external refs found!