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  5. 155996

155996


Description : chromatin remodeling factor CHD3 (PICKLE)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 155996
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.03 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 Orthogroups_2024-Update
Cre07.g325700 No alias transcription regulatory protein SNF2, putative 0.02 Orthogroups_2024-Update
Cre12.g508150 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.04 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Kfl00004_0580 kfl00004_0580_v1.1 (at2g13370 : 1061.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.04 Orthogroups_2024-Update
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
PSME_00001767-RA No alias (at5g66750 : 797.0) Protein is similar to SWI2/SNF2... 0.04 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
Potri.001G253400 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Pp1s223_99V6 No alias chromodomain helicase dna binding protein 5 0.02 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
evm.model.contig_2132.9 No alias (at3g06010 : 612.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.04 Orthogroups_2024-Update
evm.model.tig00000983.26 No alias (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update
evm.model.tig00020848.66 No alias (at2g44980 : 201.0) SNF2 domain-containing protein /... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.08 Orthogroups_2024-Update
evm.model.tig00021623.13 No alias (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR009462 DUF1086 915 1045
IPR023780 Chromo_domain 98 152
IPR023780 Chromo_domain 192 240
IPR001650 Helicase_C 595 708
IPR019787 Znf_PHD-finger 49 93
IPR009463 DUF1087 839 888
IPR000330 SNF2_N 289 574
No external refs found!