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  5. 166434

166434


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 166434
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
MA_8988374g0010 No alias (at3g18110 : 199.0) embryo defective 1270 (EMB1270);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0034508 centromere complex assembly IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 352 456
IPR002885 Pentatricopeptide_repeat 854 901
IPR002885 Pentatricopeptide_repeat 125 169
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 182 242
IPR002885 Pentatricopeptide_repeat 668 727
IPR002885 Pentatricopeptide_repeat 744 796
IPR002885 Pentatricopeptide_repeat 928 957
IPR002885 Pentatricopeptide_repeat 823 852
IPR002885 Pentatricopeptide_repeat 267 297
No external refs found!