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  5. 167367

167367


Description : homolog of nucleolar protein NOP56


Gene families : OG_42_0003242 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 167367
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
At1g56110 No alias At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7] 0.03 Orthogroups_2024-Update
Bradi1g18730 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 Orthogroups_2024-Update
Bradi1g32180 No alias homolog of nucleolar protein NOP56 0.07 Orthogroups_2024-Update
Brara.C03437.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.03 Orthogroups_2024-Update
Brara.F00004.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.04 Orthogroups_2024-Update
Brara.H00011.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.03 Orthogroups_2024-Update
Cre12.g525200 No alias homolog of nucleolar protein NOP56 0.01 Orthogroups_2024-Update
GRMZM2G110233 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
Glyma.07G102600 No alias homolog of nucleolar protein NOP56 0.03 Orthogroups_2024-Update
HORVU1Hr1G083960.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
HORVU2Hr1G022140.3 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.03 Orthogroups_2024-Update
LOC_Os03g22880 No alias nucleolar protein 5A, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g46720 No alias nucleolar protein 5A, putative, expressed 0.02 Orthogroups_2024-Update
Potri.015G092900 No alias homolog of nucleolar protein NOP56 0.04 Orthogroups_2024-Update
Seita.9G403000.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Sobic.001G371100.1 No alias scaffold component *(Nop56) of snoRNP rRNA methylation complex 0.05 Orthogroups_2024-Update
Solyc01g100570 No alias Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC) 0.03 Orthogroups_2024-Update
Sopen01g044070 No alias Putative snoRNA binding domain 0.04 Orthogroups_2024-Update
evm.model.contig_3492.5 No alias (at1g56110 : 469.0) NOP56-like protein; homolog of... 0.04 Orthogroups_2024-Update
evm.model.tig00001073.20 No alias (at1g56110 : 570.0) NOP56-like protein; homolog of... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004004 ATP-dependent RNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008186 RNA-dependent ATPase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 186 418
IPR012974 NOP5_N 13 78
No external refs found!