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  5. 180944

180944


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 180944
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_12441 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At4g15720 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.04 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F01240.1 No alias RNA editing factor *(CWM1) 0.02 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G161800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G024900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G023100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_778985g0010 No alias (at2g27610 : 621.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Seita.3G227100.1 No alias RNA editing factor *(MEF21) 0.06 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 460 582
IPR002885 Pentatricopeptide_repeat 183 230
IPR002885 Pentatricopeptide_repeat 282 327
IPR002885 Pentatricopeptide_repeat 154 179
IPR002885 Pentatricopeptide_repeat 117 146
IPR002885 Pentatricopeptide_repeat 51 74
IPR002885 Pentatricopeptide_repeat 79 106
IPR002885 Pentatricopeptide_repeat 260 281
No external refs found!