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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 182822 | |
| Cluster | HCCA clusters: Cluster_172 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 84339 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g03510 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g32220 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g37120 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g10130 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g40340 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.C00179.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.H01226.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G481373 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G160300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G062300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G018170.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G023070.1 | No alias | RNA editing factor *(OTP81) | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G023090.1 | No alias | RNA editing factor *(OTP81) | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G026110.4 | No alias | RNA editing factor *(DOT4) | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G058590.1 | No alias | RNA editing factor *(MEF1) | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G110410.2 | No alias | RNA editing factor *(OTP72) | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G008310.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G040610.4 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G113990.21 | No alias | RNA editing factor *(CRR28) | 0.03 | Orthogroups_2024-Update | |
| MA_99849g0010 | No alias | (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00001944-RA | No alias | (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| PSME_00056460-RA | No alias | (at4g21300 : 575.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Seita.1G311600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.2G109100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.3G126600.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.5G176900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.5G385400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.5G468800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.6G213800.1 | No alias | RNA editing factor *(DOT4) | 0.02 | Orthogroups_2024-Update | |
| Seita.7G131800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.7G165500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G151300.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G001200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G212200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G111700.6 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G217900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G241200.3 | No alias | RNA editing factor *(ECB2/VAC1) | 0.02 | Orthogroups_2024-Update | |
| Solyc01g081020 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
| Solyc03g115800 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc03g116000 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc10g007940 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Sopen03g038830 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g006690 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000776 | kinetochore | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006996 | organelle organization | IEP | Predicted GO |
| BP | GO:0008037 | cell recognition | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
| BP | GO:0019321 | pentose metabolic process | IEP | Predicted GO |
| BP | GO:0019566 | arabinose metabolic process | IEP | Predicted GO |
| BP | GO:0022414 | reproductive process | IEP | Predicted GO |
| BP | GO:0034508 | centromere complex assembly | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0046373 | L-arabinose metabolic process | IEP | Predicted GO |
| MF | GO:0046556 | alpha-L-arabinofuranosidase activity | IEP | Predicted GO |
| BP | GO:0048544 | recognition of pollen | IEP | Predicted GO |
| BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 428 | 458 |
| IPR002885 | Pentatricopeptide_repeat | 501 | 526 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 308 |
| IPR002885 | Pentatricopeptide_repeat | 113 | 159 |
| IPR002885 | Pentatricopeptide_repeat | 529 | 577 |
| IPR002885 | Pentatricopeptide_repeat | 313 | 356 |
| IPR002885 | Pentatricopeptide_repeat | 213 | 260 |
| IPR002885 | Pentatricopeptide_repeat | 5 | 53 |
| No external refs found! |